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Report on ammonoid soft tissue remains revealed by computed tomography

This article has been updated


Findings of ammonoid soft tissues are extremely rare compared to the rich fossil record of ammonoid conchs ranging from the Late Devonian to the Cretaceous/Paleogene boundary. Here, we apply the computed-tomography approach to detect ammonoid soft tissue remains in well-preserved fossils from the Early Cretaceous (early Albian) of NE-Germany of Proleymeriella. The ammonites were found in glauconitic–phosphatic sandstone boulders. Analyses of the high-resolution Ct-data revealed the presence of cameral sheets, the siphuncular tube wall, and the siphuncle itself. The siphuncle is a long, segmented soft tissue that begins at the rear end of the body chamber and comprises blood vessels. Chemical analyses using energy-dispersive spectroscopy (EDS) showed that all preserved soft tissues were phosphatized and are now composed of fluorapatite. The same holds true for preserved shell remains that locally show the nacreous microstructure. We provide a short description of these soft tissue remains and briefly discuss the taphonomic pathway.


In contrast to the soft parts of coleoid cephalopods (belemnites, squids, and octopuses) and in spite of the great abundance of ammonoid fossils, reports on ammonoid soft parts are very limited in number (see, e.g., Klug & Lehmann, 2015; Klug et al., 2008, 2012, 2016, 2021; Polizzotto et al., 2015; Tanabe, Sasaki, et al., 2015). The scarcity of soft tissue preservation in ammonoids is often explained by the buoyancy apparatus, which prevents the carcasses from rapid burial. Even if remains of the soft tissue became mineralized, these may be hidden by the external shell and, therefore, difficult to recognize without partially destroying the specimen. Jaws, radulae, and parts of the oesophagus are the few body parts that are sclerotized, i.e., composed of a more resistant chitin–protein complex (Saunders et al., 1978; Hunt & Nixon, 1981; Lowenstam et al., 1984; Gupta et al., 2008). The chitin makes these parts more resistant against decomposition when compared to non-sclerotized soft tissues. Accordingly, these are the most widely reported organic hard components of soft tissues (Closs, 1967a, 1967b; Hollingworth & Hilton, 1999; Klug & Jerjen, 2012; Klug & Lehmann, 2015; Klug et al., 2012, 2016, 2021; Kruta et al. 2011, 2020; Landman et al., 2010; Lehmann, 1981; Lehmann & Weitschat, 1973; Mapes et al., 2019; Tanabe, Kruta, et al., 2015; Wippich & Lehmann, 2004). Besides, a few records exist for the presence of ammonoid gills (Klug et al., 2021; Lehmann, 1985; Lehmann & Weitschat, 1973; Mironenko, 2015), and siphuncle (Mironenko, 2017 and references therein; Tanabe et al., 1982, 2000; Tanabe, Sasaki, et al., 2015). The siphuncle is a long, segmented soft tissue that begins at the rear soft body. The organic strand comprises blood vessels (two pairs of arteries and one vein in Nautilus), connecting tissue and epithelium (Barskov, 1990; Denton & Gilpin-Brown, 1973; Greenwald et al., 1982; Hoffmann et al., 2015; Tanabe et al., 2000). In Nautilus and Spirula, the siphuncle is supported and partially surrounded by the calcareous septal necks, which are tubular extensions formed by septal material. The siphuncle of Nautilus and ammonites itself lies within the siphuncular tube wall, which is an organic hard tissue that is composed of conchiolin (Bandel & Boletzky, 1979; Lowenstam et al., 1984; Obata et al., 1980). In ammonoids, the siphuncle starts within the initial chamber and passes through all chambers of the phragmocone and ends in the rear body chamber (Tanabe et al., 2005; Tanabe, Sasaki, et al., 2015).

Most of the rare reports of soft tissue preservation are limited to special depositional environments known from conservation Lagerstätten, such as, e.g., Bear Gulch (Carboniferous) Solnhofen-Eichstätt region (Late Jurassic) or Lebanon (Late Cretaceous; see Klug et al. (2021) for a more complete list). Recently, Klug et al. (2021) reported on a specimen from a Late Jurassic (Tithonian) locality in SW-Germany that was perhaps pulled out of its conch by a presumed coleoid predator, that for unknown reasons, dropped its prey, or it fell out of the conch. That unique finding and the special conservation conditions allowed for the preservation of the remnants of otherwise unknown soft tissues including, e.g., reproductive organs, gills, anus, digestive gland, crop, stomach, caecum, mantle, and the intestines.

Their finding demonstrates the importance of such conservation deposits for the reconstruction of extinct organisms. Similarly, new techniques can add to the understanding of former life forms. In case of extinct groups of organisms, such as ammonoids, the approach of computed and grinding tomography and their resulting physical and virtual models added a significant amount of palaeobiological information. For example, new information was gained about the functionality of their buoyancy apparatus, which corroborated that ammonoids could swim freely within the water column (Hoffmann et al., 2015; Lemanis, Korn, et al., 2016). Using similar approaches, ammonoid hydrostatics and hydrodynamics are now better understood (Hebdon et al., 2020; Peterman, Ciampaglio, et al., 2019b, Peterman, Hebdon, et al., 2020, Peterman, Hebdon, et al., 2020, Peterman, Yacobucci, et al., 2020). 3D data also improved our understanding of the function of septa (Lemanis et al., 2016b, 2020) and ultimately of their metabolism (Tajika et al., 2020). The computed tomography (Ct) method could also be applied to detect soft tissue remains in well-preserved fossil material, e.g., cameral sheets, siphuncular membranes, the siphuncle itself, muscle attachment scars, or blood vessel imprints (Klug et al., 2008). For the detection of blood vessel imprints in Ct volume data, we provide an example for the modern Allonautilus scrobiculatus (Fig. 1).

Fig. 1
figure 1

Septal surface of the last formed septum of an Allonautilus scrobiculatus specimen (RUB-Pal 11247; same specimen used in Lemanis et al., 2016c) showing blood vessel, muscle, and ligament imprints (after Klug et al., 2008, Fig. 6)

Here, we describe for the first time, based on computed-tomography data, ammonoid soft tissue remains that were preserved within the conch of an Early Cretaceous (early Albian) Proleymeriella schrammeni from NE-Germany and briefly discuss the taphonomic history.

Materials and methods

The herein described specimens of Proleymeriella schrammeni (coll. No. RUB-Pal 11285, 11286) were collected by Werner Beckert from glacial erratic deposits in NE Germany (Wolgast-Hohendorf, Mecklenburg-Vorpommern). These deposits contain abundant Early Cretaceous (early Albian) glauconitic–phosphatic sandstone boulders (Fig. 2), which occasionally contain ammonites of the Leymeriella tardefurcata and earliest Douvilleiceras mammillatum Zones (see Lehmann et al., 2016 for details). The original aragonite shell material of the mostly hollow or partially sediment filled ammonites is diagenetically transferred into calcium phosphate. Some of the ammonites, however, still show iridescent shell parts (RUB-Pal 11287).

Fig. 2
figure 2

Internal mould of an undetermined ammonite (RUB-Pal 11287) with visible suture line and partial shell remains that still show the typical iridescent behaviour of the original aragonitic shell, but is now fluorapatite

Both the actual specimen RUB-Pal 11285 and the computed-tomography data are stored at the Ruhr-Universität Bochum. Ct data were collected with 130 kV voltage, 350 µA current, and 500 ms exposure time resulting in a data set with the following dimensions (X = 1906, Y = 2104, Z = 1898 slides) and a resolution of 9.75 µm isotropic voxel size. The computed-tomographic data set (i.e., scalar volume) was transformed and reoriented with respect to the studied specimen using 3D grids employing the open-source program 3D Slicer (Fedorov et al., 2012). This allowed to obtain precise longitudinal and transversal cross sections of the specimen. A detailed description of this procedure will be presented in a separate work. Furthermore, an inverted grey filter was applied to facilitate visualization of the tomographic data sets, and chambers were labeled in order of their ontogenetic occurrence. Finally, 3D empirical models based on the structures described were obtained through a semi-automatic process, which consisted of a basic thresholding segmentation edited using the basic tools included in the 3D Slicer software. A second specimen (RUB-Pal 11286) was examined under the scanning electron microscope (SEM; Zeiss Gemini 2 – Merlin) with an acceleration voltage of 3 kV, a probe current of 36–54 pA, and a working distance of 14.9 to 6.8 mm. Energy dispersive spectra were collected for the iridescent shell material (RUB-Pal 11287) and the siphuncle from specimen RUB-Pal 11286 with 20 kV acceleration voltage and a working distance of 10 mm (Fig. 3d–e).

Fig. 3
figure 3

Geochemical composition of the originally aragonitic shell and the surrounding rock material from specimen RUB-Pal 11287, a, c both show relics of the original tablet microstructure (arrows), b shows a quartz grain coated with a fluorapatite crust, d EDS spectrum from the phosphate collected in the area show in C (star), e EDS spectrum collected from the crust shown in B (star)


Geochemical composition

Energy-dispersive analyses show that the primary aragonitic shell material was diagenetically transformed into fluorapatite with about 11%mass of fluorine, 15%mass phosphorous, and a total of about 37%mass calcium. The surrounding rock matrix is composed of a variety of grains including glauconite and quartz grains showing crusts also composed of fluorapatite with about 12%mass of fluorine, 15%mass phosphorous, and a total of 36%mass of calcium.

Ct-volume data

Inspection of the acquired high-resolution Ct-volume data and their subsequent reconstruction revealed first data of the specimen. The preserved conch has a maximum diameter of 14.27 mm, with a whorl width of 5.92 mm and a whorl height of 5.69 mm.

Consequently, at the largest preserved diameter, the conch is discoidal to subevolute in shape. The exceptional preservation allows the recognition of suture lines and the surface morphology of the virtual internal mould (Fig. 4a), septal morphology (Fig. 4b), and the number of chambers (hollow/filled) including the initial chamber (ic), ammonitella, and the position of the siphuncle (Fig. 4c).

Fig. 4
figure 4

Proleymeriella schrammeni, NE-Germany, early Albian, RUB-Pal 11285 a 3D empirical model in lateral view showing the suture lines and morphology of the internal mould for all hollow chambers, b same model and orientation in a semi-transparent appearance showing the shape of the septa and septal spacing for all hollow chambers, c Virtual longitudinal cross section showing 57 preserved chambers (not filled/filled) including the initial chamber (ic—see Fig. 8 for a close up), and the ventral position of the siphuncle. The chambers were labeled following the occurrence during ontogeny, ts tubular structure, stw siphuncular tube wall, note: grey scale values inverted


Only the last three (55–57) of 57 preserved chambers were filled with sediment, while most chambers are empty (Fig. 4c). The external shell wall shows no signs of shell breakages or deformation. The connecting ring/siphuncular tube wall (stw), that connects successive chambers of the phragmocone, is preserved in the first 35 chambers, only interrupted in chambers 8 and 9, and reappearing in chambers 37–39 as a collapsed structure, 47–49, and in chamber 51 (Fig. 4c). Closer inspection of the inner structures revealed the presence of a tubular structure (ts) within the siphuncular tube wall (Fig. 4c). The tubular structure has a diameter of about 0.11 mm and spans an area of about 0.007 mm2, which is around 8.87% of the stw area (Fig. 5). The tubular structure is visible in chambers 1–7, 21–31, and isolated as short segments on chambers 34, 35, 48, and 51 (Fig. 5). The lumen of ts is recognizable in just a few sections of these chambers, while it is collapsed lying on the siphuncle´s ventral side or is strongly deformed otherwise (e.g., Fig. 4c, chambers 23–27; Figs. 5d, 7a).

Fig. 5
figure 5

Proleymeriella schrammeni, NE-Germany, early Albian, RUB-Pal 11285, six orthoslices showing sections of the specimen and potential soft tissue remains. a longitudinal cross section showing the tubular structure (ts) inside the siphuncular tube wall (stw) within chamber 34, stippled lines show cutting plane for Fig. b, c; b, c cross sections of the structures indicated in A showing the siphuncular tube wall and the tubular structure sitting within the stw; d longitudinal cross sections showing the tubular structure (ts) inside the siphuncular tube wall (stw) within chamber 22–23, stippled lines show the cutting planes for e, f; e, f cross sections of the structures indicated in d, showing the siphuncular tube wall and the tubular structure sitting within the stw, note: grey scale values inverted

From another specimen (RUB-Pal 11286), a part of the siphuncle was extracted and examined under the SEM (Fig. 6). That specimen displays small knobs on the surfaces of the stw and the ts. The siphuncular tube wall consists of a three-layered spherulitic structure on the external and internal surface. A similar three-layered structure is present in the tubular structure with a larger, subcentral, and three smaller, marginal openings (Fig. 6b). At the opposite end of the siphuncle fragment, the structure shows only two relatively large openings compared to the other end (Fig. 6c).

Fig. 6
figure 6

Proleymeriella schrammeni, NE-Germany, early Albian, RUB-Pal 11286, a overview of the siphuncle segment with the surface of the siphuncular tube wall and parts of the septum attached, b apertural end of the siphuncle with one main opening (?vein) and a smaller opening (?artery) which may correspond with the smaller opening in c, the other two openings are unclear and could represent two arteries or diagenetic artifacts, c adapertural end with one larger (?vein) and one smaller openings (?artery), v vein, a artery, ts tubular structure, stw siphuncular tube wall

Cameral sheets

Based on orthoslice views of the specimen RUB-Pal 11285, membrane-like structures were identified as transversal cameral sheets (cs), due to the lack of a connection to the siphuncle and the relative position within the chambers, at the dorsal side of chambers 53 and 54 (see Polizzotto et al. 2015; Weitschat and Bandel, 1991; Fig. 7). After image post-processing and segmentation work, cameral sheets were found to be attached to the septa also in chambers 29, 30, and 43. These structures show signs of elasticity and slight deformation comparable to the tubular structure. Moreover, the cameral sheets share comparably high X-ray absorption properties when compared to the ts in Ct-images, which suggests that both the ts and cs share a similar composition. These cameral sheets could not be reconstructed completely due to their low thickness and the insufficient resolution. The thickest membrane was found in chamber 53 and is 0.03 mm thick (Fig. 7).

Fig. 7
figure 7

Proleymeriella schrammeni, NE-Germany, early Albian, RUB-Pal 11285, ae longitudinal orthoslices arrows indicate dorsal position of cameral sheets inside the chambers 29, 30, 43, and 53. ce show the continuity of the cameral sheets thorough the chamber. f 3D-empirical model obtained from the tomographic dataset showing the dorsal position of the cameral sheets (white = cameral sheets, grey = conch), note: grey scale values inverted


Several structures of the ammonitella (embryonic shell) were visualized using the tomographic data (Fig. 8). These structures are labeled according to De Baets et al. (2015) and include the initial chamber (ic = protoconch), the subprismatic initial chamber wall (sp-icw), the prismatic ventral wall (p-vw), the primary constriction (pc), the primary varix (pv), and possibly the caecum (ca). The proseptum and the prosiphon were not recognized. The tubular structure is preserved already within the ammonitella, but may also represent the siphuncular tube wall. The ammonitella is about 1.16 mm in diameter with a whorl width of 0.72 mm and an umbilical width of 0.16 mm at its largest diameter. These morphological parameters translate into a pachyconic to involute embryonic conch (see Klug et al. 2015). The initial chamber is spindle-like to sub-spherical in shape and has a maximum and minimum diameter of 0.64 and 0.47 mm, respectively, and reaches 0.60 mm in width (see De Baets et al., 2015).

Fig. 8
figure 8

Proleymeriella schrammeni, NE-Germany, early Albian, RUB-Pal 11285, longitudinal section of the specimen showing the inner structures of the ammonitella. Am ammonitella, ca caecum, ic initial chamber, sp-icw subprismatic initial chamber wall, p-vw prismatic ventral wall of ammonitella, pc primary constriction, pv primary varix; ts tubular structure (most likely the siphuncle), stw = siphuncular tube wall, note: grey scale values inverted


The fossil record of soft tissue remains is restricted to localities and strata with exceptional preservational conditions. EDS spectra revealed the presence of large amounts of phosphate and fluorine in the shell (Fig. 3d, e, see Tanabe et al., 2000 and Mironenko, 2017 for similar EDS spectra). Furthermore, the siphuncular remains also contain high amounts of phosphate, thus suggesting the taphonomic process of phosphatization as responsible agent for the exceptional preservation of the herein described early Albian ammonites. The process of soft tissue phosphatization increased during the Cretaceous to Eocene compared to the Palaeozoic (Dornbos, 2011). Phosphatization, however, still is a rare mode of fossil preservation that allows the preservation of hard and soft tissues on a cellular and even subcellular level (e.g., Hagadorn et al., 2006). It is noteworthy to point out that phosphatization is a highly selective and biased taphonomic pathway (Dornbos, 2011).

Lehmann et al. (2016) discussed the general depositional environment for the concretions that bear the largely hollow-preserved phosphatized ammonites described herein. They argued that sandstone concretions rich in glauconite with phosphate cements indicate a marine environment with an organic rich sedimentation and low sedimentation rates (Tucker, 1985). Such conditions can be found at the outer shelf or in upwelling areas (Lehmann et al., 2016). The relatively large quartz grains, however, indicate a deposition under higher water energies, i.e., relatively shallow marine and potentially close to the coastline. Recent phosphorites typically form in environments characterized by low sedimentation rates, strong seafloor currents, and a large influx of organic matter due to high primary productivity (Baturin, 1999; Föllmi, 1996). Phosphatized sandstones have a higher resistance against mechanical erosion due to reworking, and accordingly can be found in higher concentrations in reworked horizons which is the case for our examples of glacial erratic boulders (Jarvis, 2006; Tucker, 1985). That explains their high abundance within some specific sand layers in NE-Germany and elsewhere. Specifically, for the concretions examined herein, Fechner and Schneider (1997) found that phosphatization took place in two phases.

The iridescent shell fragments (Fig. 2) and the here described soft tissue remains (Fig. 57) are two prime examples underlining the importance of phosphatized fossils. The iridescent shell (hard or mineralized tissue) demonstrates the preservation of submicrometer-scale structures, namely, the columnar nacre of the ammonite shell. The originally aragonitic ammonoid shell (Bøggild, 1930; Immenhauser et al., 2016; Keupp, 2000) is composed of an outer and inner prismatic layer and a middle layer composed of thin (submicrometer) aragonitic tablets forming the columnar nacre structure. Aragonite, however, is metastable under atmospheric conditions and easily transforms into blocky calcite losing all its microstructural information (Dullo & Bandel, 1988).

By contrast, preserved soft tissue remains, such as the siphuncular tube wall, the siphuncle, and cameral sheets, show the potential of phosphatization to preserve delicate non-mineralized tissues and their anatomy (Figs. 67). Because the original soft tissue is not preserved, such structures are preferable called pseudomorphs: they are generally formed by the replacement of tissues by, e.g., phosphates, carbonates, or pyrite (see Mähler et al., 2020 for more details). The preservation of these organic structures suggests an early diagenetic phosphatization (Weitschat, 1986; Weitschat and Bandel, 1991). Hewitt and Westermann (1983) and Lehmann et al., (2016) reported that the siphuncular tube wall is preserved as francolite, which is a carbonate-rich variant of fluorapatite. Most likely, the process of phosphatization takes place early during diagenesis (Allison, 1988; Briggs et al. 1993; Hewitt & Westermann, 1983; Tanabe, Sasaki, et al., 2015; Wilby et al. 2004). Partially deformed and collapsed soft tissue structures suggest that their phosphatization took place during bacterial and fungal activity (Allison, 1988; Maeda & Seilacher, 1996; Tanabe, Sasaki, et al., 2015). Potentially, the phosphate required for phosphatization stems largely from their own decaying soft tissues due to, e.g., microbial breakdown of organic compounds, such as adenosine triphosphate (Briggs & Kear, 1993, Prévot and Lucas 1984, Wilby et al. 2004). Under oxic conditions, chemical components of organic matter will combine to ferric hydroxides quickly. Accordingly, anoxic conditions are required for the formation of phosphatized soft tissues (Allison, 1988). Phosphatization of soft tissues may have taken place within days to weeks (Föllmi, 1996). The bacterial decay of soft tissue produced not only enough phosphate, but also lowered the pH sufficiently to phosphatize the remaining non-decayed tissues (Klug et al., 2005). Lowering of the pH (< 6.38 = the phosphatization window that favors the precipitation of apatite) suggests a “closed system” that keeps the acidic biproducts of microbial metabolism, such as CO2 and H2SO4 (Briggs & Kear, 1993; Briggs & Wilby, 1996, Clements et al. 2017). Here, we argue that the phragmocone itself served as a “closed system” comparable to the cuticular envelope of crustaceans (Briggs & Wilby, 1996; Mähler et al., 2020). Within the phragmocone chambers, the ion concentrations and low pH levels generated by microbial decomposition were maintained, while the body chamber (that contained the largest part of the soft tissues) represents an “open system” allowing the complete degradation of soft tissues without entering the phosphatization window. Phosphatization in a closed system may also explain the preservation of phosphatized pellicle and siphuncle as shown by Weitschat (1986) and herein (Fig. 9a, b) for the Middle Triassic ammonite Amphipopanoceras. After phosphatization took place the phragmocone chambers got filled will calcite which is also observed for other localities, e.g., Lower Cretaceous (Albian) of Madagascar (Fig. 9c, d, ammonite: Desmoceras sp.). Here, the presence of small framboid pyrite indicates the anoxic conditions during siphuncular phosphatization.

Fig. 9
figure 9

Additional examples of phosphatized organic remains of ammonoids. a, b Desmoceras sp. (RUB-Pal 11288), Lower Cretaceous (Albian) of Madagascar with the phosphatized siphuncular tube wall preserved. Presence of pyrite framboids indicate anoxic conditions during early diagenesis. c, d Amphipopanoceras sp. (RUB-Pal 11289), Middle Triassic, Spitsbergen (Greenland) with phosphatized pellicle, siphuncular tube wall remains and algae or fungi

The siphuncular tube wall of Proleymeriella partially contains remnants of the siphuncle and is also preserved within the ammonitella. The siphuncle extracted from a second specimen from the same locality shows one large opening at both ends, which most likely represents the siphuncular vein. It is uncertain whether the other observed openings represent the siphuncular arteries or not.

The phosphatized membrane-like structures occur in the dorsal parts of a number of chambers showing no connection to the siphuncle. Accordingly, we regard these cameral sheets as transversal cameral sheets (Polizzotto et al., 2015). Unfortunately, our data on transversal cameral sheets do not provide insights about their formation (secretion model versus desiccation model: see Weitschat and Bandel 1991, Landman et al., 2006, Polizzotto et al., 2015 for details).


Based on high-resolution Ct-data, we described that the presence of soft tissue remains for early Albian Proleymeriella including transversal cameral sheets, the siphuncular tube wall, and the siphuncular soft tissues. Potentially, the siphuncular vein is visible, while the presence or absence of the arteries has not been clearly confirmed in the present material. Preservation of soft tissue remains as pseudomorphs of fluorapatite due to phosphatization that took place under “closed system” conditions is discussed. Conditions are comparable with microenvironments found in decomposing crustacean carcasses and also affected the primary aragonitic shell which is now transformed to fluorapatite or francolite—a carbonate rich fluorapatite. The examination of further specimens with a similar preservation will help clarifying the homologisation of the siphuncular organs.

Availability of data and materials

The generated and analyzed data and specimens used for this study are shown in the manuscript and stored at the Ruhr-Universität Bochum.

Change history

  • 01 November 2021

    Open Access funding note has been added to the ‘Funding’ section.







Cameral sheets


Initial chamber


Subprismatic initial chamber wall


Prismatic ventral wall of ammonitella


Primary constriction


Primary varix


Siphuncular tube wall


Tubular structure


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RH acknowledges Werner Beckert and the late Wolfgang Weitschat for putting specimens to our disposal and Dieter Buhl for providing images shown in Fig. 9.


Open Access funding enabled and organized by Projekt DEAL.

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RH had the project idea and wrote most part of the text with contributions of all co-authors. DMA did the CT-data analysis and imaging, RH and DMA analyzed and interpreted the results. All authors read and approved the final manuscript and revised the figures.

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Hoffmann, R., Morón-Alfonso, D., Klug, C. et al. Report on ammonoid soft tissue remains revealed by computed tomography. Swiss J Palaeontol 140, 11 (2021).

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